Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs975323 | chr3:161021322 | A/G | 3.86E-5 | 513 | 24.63 | 24.07 | 17.53 | KM Plot |
| HNSC | rs9863590 | chr3:161116445 | T/C | 3.26E-5 | 504 | 22.95 | 25.67 | 17.37 | KM Plot |
| HNSC | rs9870059 | chr3:161017240 | T/C | 4.64E-5 | 511 | 24 | 24.12 | 17.53 | KM Plot |
| HNSC | rs998310 | chr4:140308984 | A/C | 3.8E-5 | 515 | 18.67 | 26.72 | 20.78 | KM Plot |
| KIRC | rs10020653 | chr4:135491259 | A/C | 2.74E-5 | 527 | 50.53 | 26.1 | 40.58 | KM Plot |
| KIRC | rs10029981 | chr4:186335706 | G/T | 8.66E-7 | 525 | 3.53 | 39.5 | 39.38 | KM Plot |
| KIRC | rs10032989 | chr4:186336583 | G/A | 8.94E-7 | 524 | 3.53 | 39.5 | 39.53 | KM Plot |
| KIRC | rs1005327 | chr22:17634972 | C/G | 3.94E-5 | 508 | 14.42 | 49.12 | 37.6 | KM Plot |
| KIRC | rs10124580 | chr9:97389429 | A/T | 1.43E-5 | 526 | 4.63 | 41.27 | 39.08 | KM Plot |
| KIRC | rs10129331 | chr14:91747569 | C/T | 0 | 527 | 39.08 | 41.65 | 1.7 | KM Plot |
| KIRC | rs10159396 | chr1:188395056 | G/T | 3.92E-5 | 519 | 11.9 | 38.97 | 41.73 | KM Plot |
| KIRC | rs10161585 | chr13:23999136 | C/T | 4.31E-5 | 527 | 40.58 | 37.72 | 18.77 | KM Plot |
| KIRC | rs10234273 | chr7:46581039 | T/C | 5.18E-5 | 518 | 47.58 | 33.8 | 28.7 | KM Plot |
| KIRC | rs10239059 | chr7:46582500 | T/C | 6.85E-5 | 517 | 47.58 | 33.75 | 28.7 | KM Plot |
| KIRC | rs10248503 | chr7:46581309 | A/G | 4.56E-5 | 517 | 47.58 | 33.83 | 28.7 | KM Plot |